STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0598ABC transporter, multidrug efflux family; Identified by match to protein family HMM PF00005. (605 aa)    
Predicted Functional Partners:
proV-2
Choline transporter; Identified by match to protein family HMM PF00005.
 
  
0.908
SRU_0597
UDP-glucuronate decarboxylase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
  
   0.641
SRU_0601
Perosamine synthetase, putative; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.635
SRU_1409
Probable toxin secretion ABC transporter ATP-binding protein, putative; Identified by match to protein family HMM PF00005.
 
 
  
0.580
pglB
Pilin glycosylation protein PglB.
     
 0.558
SRU_0999
ATP-binding protein of ABC transporter; Identified by match to protein family HMM PF00005.
 
 
  
0.551
spsE
Sialic acid synthase; Identified by match to protein family HMM PF03102.
     
 0.542
SRU_0608
CMP-N-acetlyneuraminic acid synthetase; Identified by match to protein family HMM PF02348.
     
 0.540
SRU_0600
Nucleoside-diphosphate-sugar epimerase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
   0.530
SRU_0603
Formyltransferase, putative; Identified by match to protein family HMM PF00551; match to protein family HMM PF02911.
     
 0.528
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.