STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0599NDP-sugar dehydrogenase, putative; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (491 aa)    
Predicted Functional Partners:
SRU_0602
UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350.
  
 
 0.992
SRU_0601
Perosamine synthetase, putative; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.939
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
    
  0.906
SRU_0600
Nucleoside-diphosphate-sugar epimerase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
  
 0.845
rfbB
dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.614
SRU_0604
Hypothetical conserved protein; Identified by match to protein family HMM PF02585.
 
     0.557
spsE
Sialic acid synthase; Identified by match to protein family HMM PF03102.
       0.542
SRU_0607
Putative mannose-1-phosphate guanyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM PF00571.
     
 0.542
SRU_0608
CMP-N-acetlyneuraminic acid synthetase; Identified by match to protein family HMM PF02348.
       0.537
SRU_0596
UDP-glucose dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03721.
   
0.522
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.