STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0608CMP-N-acetlyneuraminic acid synthetase; Identified by match to protein family HMM PF02348. (236 aa)    
Predicted Functional Partners:
SRU_0602
UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350.
  
 0.987
spsE
Sialic acid synthase; Identified by match to protein family HMM PF03102.
 
  
 0.982
SRU_0607
Putative mannose-1-phosphate guanyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM PF00571.
  
 0.964
pglB
Pilin glycosylation protein PglB.
 
  
 0.903
SRU_0601
Perosamine synthetase, putative; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.897
SRU_0603
Formyltransferase, putative; Identified by match to protein family HMM PF00551; match to protein family HMM PF02911.
     
 0.856
SRU_0604
Hypothetical conserved protein; Identified by match to protein family HMM PF02585.
 
     0.804
SRU_0653
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
      0.667
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
      0.647
SRU_0598
ABC transporter, multidrug efflux family; Identified by match to protein family HMM PF00005.
     
 0.540
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.