STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0622Putative glycosyltransferase; Identified by match to protein family HMM PF02397. (250 aa)    
Predicted Functional Partners:
pglB
Pilin glycosylation protein PglB.
 
  
 0.944
SRU_0601
Perosamine synthetase, putative; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.892
SRU_0592
Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563.
  
  
 0.807
SRU_1271
Pilin glycosylation enzyme, putative; Identified by match to protein family HMM PF04932.
  
  
 0.724
SRU_1675
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
 0.720
mrp
Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.699
SRU_0594
Chain length determinant protein; Identified by match to protein family HMM PF02706.
  
  
 0.688
manC
Mannose-1-phosphate guanylyltransferase; Identified by match to protein family HMM PF00483.
  
  
 0.658
SRU_0224
Putative colanic acid biosynthesis glycosyl transferase; Identified by match to protein family HMM PF00534.
  
 0.633
rfbQ
Rhamnosyl transferase; Identified by match to protein family HMM PF00535.
 
  
 0.589
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.