STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0645Hypothetical protein; Identified by Glimmer2; putative. (477 aa)    
Predicted Functional Partners:
SRU_2320
Magnesium chelatase, subunit ChlI family; Identified by match to protein family HMM PF01078.
  
 
 0.733
SRU_0594
Chain length determinant protein; Identified by match to protein family HMM PF02706.
  
     0.732
SRU_0440
Conserved hypothetical protein.
  
     0.710
SRU_1482
Conserved hypothetical protein.
  
    0.627
SRU_2053
Conserved hypothetical protein; Belongs to the UPF0312 family.
  
     0.553
SRU_0367
Conserved hypothetical protein.
  
     0.547
SRU_0646
Protein of unknown function (DUF820) family; Identified by match to protein family HMM PF05685.
       0.517
SRU_1220
Protein of unknown function (DUF1232) family; Identified by match to protein family HMM PF06803.
  
     0.513
SRU_0592
Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563.
  
     0.512
SRU_2181
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF07980.
  
     0.508
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.