STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0686Transglycosylase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912. (791 aa)    
Predicted Functional Partners:
mrdA
Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
  
 
 
 0.793
sbcD
Nuclease SbcCD, D subunit subfamily, putative; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.682
SRU_0559
Cell division protein FtsW, putative; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.
  
   
 0.653
rodA
Rod shape-determining protein RodA; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.
  
   
 0.651
SRU_0685
Ser/Thr protein phosphatase superfamily; Identified by match to protein family HMM PF00149.
       0.637
SRU_2168
Putative peptidase; Identified by match to protein family HMM PF01551.
  
   
 0.618
murG
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
   
 0.589
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
  
     0.586
SRU_1602
M23 peptidase domain protein; Identified by match to protein family HMM PF01551.
  
     0.564
mltG
Uncharacterized BCR, YceG family COG1559; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
   
 0.555
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.