STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0743Phytoene dehydrogenase and related proteins; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. (491 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Identified by match to protein family HMM PF00494.
  
 0.925
crtY
Licopene beta-cyclase; Identified by similarity to GB:CAB86388.1.
 
     0.906
SRU_1478
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.596
ftsQ
FtsQ.
       0.532
SRU_2579
Sensory rhodopsin (SRI); Identified by similarity to SP:P33743; match to protein family HMM PF01036.
 
     0.491
SRU_2511
Sensory rhodopsin (SRI); Identified by similarity to SP:P33743; match to protein family HMM PF01036.
 
     0.479
SRU_1500
Xanthorhodopsin; Identified by match to protein family HMM PF01036.
 
     0.465
brp
Bacteriorhodopsin related protein; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
       0.459
SRU_2780
Halorhodopsin (HR); Identified by similarity to SP:P33742; match to protein family HMM PF01036.
 
     0.454
SRU_0741
2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111.
       0.435
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.