STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0753Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (288 aa)    
Predicted Functional Partners:
SRU_0754
Probable outer membrane receptor protein, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.872
SRU_0752
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.648
SRU_0751
Putative integral membrane protein; Identified by match to protein family HMM PF01061.
       0.597
SRU_0750
Histidine kinase family; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.
       0.502
SRU_0749
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
     0.500
SRU_2181
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF07980.
  
     0.447
SRU_2012
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.440
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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