STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0803Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family. (297 aa)    
Predicted Functional Partners:
SRU_1506
Tyrosine recombinase xerC; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family.
  
     0.773
SRU_0887
Integron integrase subfamily; Identified by match to protein family HMM PF00589; match to protein family HMM TIGR02249.
  
     0.704
SRU_1505
Phage integrase, N-terminal SAM-like domain protein; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family.
  
     0.661
SRU_0071
Integrase/recombinase; Identified by match to protein family HMM PF00589; match to protein family HMM TIGR02249.
  
     0.650
comF
Competence protein F.
   
    0.529
tyrA
Prephenate dehydrogenase; Identified by match to protein family HMM PF01842; match to protein family HMM PF02153; match to protein family HMM PF03807.
  
    0.468
SRU_0595
Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.
  
     0.445
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.