STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0818TPR-containing protein Mql1, putative; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. (527 aa)    
Predicted Functional Partners:
SRU_0817
Translation initiation factor eIF-2B alpha subunit; Identified by match to protein family HMM PF00293; match to protein family HMM PF01008; Belongs to the eIF-2B alpha/beta/delta subunits family.
  
    0.647
SRU_0908
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
   
   0.544
SRU_1602
M23 peptidase domain protein; Identified by match to protein family HMM PF01551.
   
   0.544
SRU_1600
Tetratricopeptide repeat family; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
   
 0.462
SRU_0819
Hypothetical protein; Identified by Glimmer2; putative.
       0.460
SRU_0066
Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515.
  
     0.447
SRU_2700
TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF07721.
 
   
 0.413
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.403
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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