STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0873Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (668 aa)    
Predicted Functional Partners:
drrA
Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
   0.853
drrA-2
Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
   0.849
SRU_1175
Alkaline phosphatase synthesis transcriptional regulatory proteinphoP; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
  
   0.848
SRU_2492
PhoP3 response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
   0.848
drrA-5
Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
  
   0.842
SRU_2830
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
   0.841
cheY
Chemotaxis protein CheY; Identified by match to protein family HMM PF00072.
 
 
 0.833
drrA-4
Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
   0.812
cheB
Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229.
 
 
 0.806
ark-2
Adaptive-response sensory-kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
   0.745
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.