SRU_0906 protein (Salinibacter ruber) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

SRU_0906

Identified by match to protein family HMM PF00691; match to protein family HMM PF00801. (323 aa)

Predicted Functional Partners:

SRU_2383

0.796

SRU_0417

0.759

SRU_1850

0.650

SRU_0104

0.608

SRU_1569

0.580

rpsT

0.570

SRU_0992

0.555

SRU_2811

0.531

SRU_0066

0.526

SRU_0944

0.508

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0066	SRU_0906	SRU_0066	SRU_0906	Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515.	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	0.526
SRU_0104	SRU_0417	SRU_0104	SRU_0417	LysM domain protein; Identified by match to protein family HMM PF01476.	Hypothetical protein; Identified by Glimmer2; putative.	0.436
SRU_0104	SRU_0906	SRU_0104	SRU_0906	LysM domain protein; Identified by match to protein family HMM PF01476.	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	0.608
SRU_0104	SRU_0944	SRU_0104	SRU_0944	LysM domain protein; Identified by match to protein family HMM PF01476.	Acylaminoacyl-peptidase; Identified by match to protein family HMM PF00326.	0.414
SRU_0104	SRU_2383	SRU_0104	SRU_2383	LysM domain protein; Identified by match to protein family HMM PF01476.	Hypothetical protein; Identified by Glimmer2; putative.	0.436
SRU_0417	SRU_0104	SRU_0417	SRU_0104	Hypothetical protein; Identified by Glimmer2; putative.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.436
SRU_0417	SRU_0906	SRU_0417	SRU_0906	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	0.759
SRU_0417	SRU_1569	SRU_0417	SRU_1569	Hypothetical protein; Identified by Glimmer2; putative.	Outer membrane lipoprotein carrier protein LolA; Identified by match to protein family HMM PF03548.	0.446
SRU_0417	SRU_1850	SRU_0417	SRU_1850	Hypothetical protein; Identified by Glimmer2; putative.	Tetratricopeptide repeat domain protein.	0.639
SRU_0417	SRU_2383	SRU_0417	SRU_2383	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.403
SRU_0906	SRU_0066	SRU_0906	SRU_0066	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515.	0.526
SRU_0906	SRU_0104	SRU_0906	SRU_0104	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.608
SRU_0906	SRU_0417	SRU_0906	SRU_0417	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	Hypothetical protein; Identified by Glimmer2; putative.	0.759
SRU_0906	SRU_0944	SRU_0906	SRU_0944	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	Acylaminoacyl-peptidase; Identified by match to protein family HMM PF00326.	0.508
SRU_0906	SRU_0992	SRU_0906	SRU_0992	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	Hypothetical protein; Identified by Glimmer2; putative.	0.555
SRU_0906	SRU_1569	SRU_0906	SRU_1569	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	Outer membrane lipoprotein carrier protein LolA; Identified by match to protein family HMM PF03548.	0.580
SRU_0906	SRU_1850	SRU_0906	SRU_1850	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	Tetratricopeptide repeat domain protein.	0.650
SRU_0906	SRU_2383	SRU_0906	SRU_2383	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	Hypothetical protein; Identified by Glimmer2; putative.	0.796
SRU_0906	SRU_2811	SRU_0906	SRU_2811	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	Hypothetical protein; Identified by Glimmer2; putative.	0.531
SRU_0906	rpsT	SRU_0906	SRU_0907	Identified by match to protein family HMM PF00691; match to protein family HMM PF00801.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.570