STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecBABC-type Fe3+-siderophores transport systems; Identified by match to protein family HMM PF01497. (268 aa)    
Predicted Functional Partners:
SRU_1225
Periplasmic binding protein, putative; Identified by match to protein family HMM PF01497.
 
    
0.880
SRU_1224
Hemin ABC transporter, permease protein, putative; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.838
SRU_2729
Hemin ABC transporter, permease protein, putative; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.834
SRU_1293
Hemin ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.799
SRU_1689
methylmalonyll-CoA mutase; Identified by match to protein family HMM PF01642; match to protein family HMM PF03308.
 
  
 0.790
proV-2
Choline transporter; Identified by match to protein family HMM PF00005.
  
 
 0.753
SRU_2728
Hemin-binding periplasmic protein hmut precursor; Identified by match to protein family HMM PF01497; similar to agr_c_4467p.
 
  
 0.683
SRU_0920
Renal dipeptidase superfamily; Identified by match to protein family HMM PF01244.
       0.584
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
      0.555
SRU_0922
Truncated methionine synthase-like protein; Identified by match to protein family HMM PF01717.
     
 0.542
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.