STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0934GlcNAc-PI de-N-acetylase family; Identified by match to protein family HMM PF02585. (252 aa)    
Predicted Functional Partners:
bshC
Conserved hypothetical protein; Belongs to the BshC family.
 
   
 0.789
SRU_2085
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
    0.770
SRU_1493
Protein of unknown function (DUF1094) family; Belongs to the UPF0403 family.
  
     0.630
SRU_0242
Conserved hypothetical protein; Belongs to the UPF0403 family.
  
     0.626
SRU_1699
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.596
leuS
leucyl-tRNA synthetase; Identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.587
SRU_0604
Hypothetical conserved protein; Identified by match to protein family HMM PF02585.
  
     0.572
SRU_2679
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.529
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.459
SRU_1311
General stress protein.
  
   
 0.446
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.