STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0989Rhodanese-like domain protein; Identified by match to protein family HMM PF00581. (328 aa)    
Predicted Functional Partners:
cysH
Phosophoadenylyl-sulfate reductase subfamily; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
 
  
 0.922
SRU_1858
Cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.
   
 0.916
SRU_1368
Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.
 
 
 0.913
SRU_2363
Cys/Met metabolism PLP-dependent enzyme superfamily; Identified by match to protein family HMM PF01053.
 
 
 0.912
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
   
 
  0.904
SRU_0938
Aspartate aminotransferase; Identified by match to protein family HMM PF00155; match to protein family HMM PF01212.
     
 0.903
SRU_1161
Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.
 
 
 0.830
cysD
O-acetylhomoserine sulfhydrylase; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326.
 
   
 0.800
SRU_2042
MoeZ/MoeB domain family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.
 
 
 
 0.603
SRU_0326
Metallo-beta-lactamase superfamily protein; Identified by match to protein family HMM PF00581; match to protein family HMM PF00753.
 
 
 0.544
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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