ftsE protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ftsE

Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005. (267 aa)

Predicted Functional Partners:

SRU_1954

0.997

ybjZ

0.907

SRU_2851

0.906

SRU_1602

0.882

SRU_0908

0.792

pdxA

0.709

scpA

0.604

ftsZ

0.542

SRU_1005

0.511

SRU_0294

0.467

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0294	ftsE	SRU_0294	SRU_1007	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005.	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	0.467
SRU_0908	SRU_1602	SRU_0908	SRU_1602	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	M23 peptidase domain protein; Identified by match to protein family HMM PF01551.	0.748
SRU_0908	SRU_1954	SRU_0908	SRU_1954	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	Cell division ABC transporter, permease protein FtsX, putative; Identified by match to protein family HMM PF02687; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.850
SRU_0908	ftsE	SRU_0908	SRU_1007	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	0.792
SRU_1005	ftsE	SRU_1005	SRU_1007	Dhh family/dhha1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	0.511
SRU_1005	pdxA	SRU_1005	SRU_1006	Dhh family/dhha1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).	0.574
SRU_1602	SRU_0908	SRU_1602	SRU_0908	M23 peptidase domain protein; Identified by match to protein family HMM PF01551.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.748
SRU_1602	SRU_1954	SRU_1602	SRU_1954	M23 peptidase domain protein; Identified by match to protein family HMM PF01551.	Cell division ABC transporter, permease protein FtsX, putative; Identified by match to protein family HMM PF02687; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.949
SRU_1602	ftsE	SRU_1602	SRU_1007	M23 peptidase domain protein; Identified by match to protein family HMM PF01551.	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	0.882
SRU_1954	SRU_0908	SRU_1954	SRU_0908	Cell division ABC transporter, permease protein FtsX, putative; Identified by match to protein family HMM PF02687; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.850
SRU_1954	SRU_1602	SRU_1954	SRU_1602	Cell division ABC transporter, permease protein FtsX, putative; Identified by match to protein family HMM PF02687; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	M23 peptidase domain protein; Identified by match to protein family HMM PF01551.	0.949
SRU_1954	ftsE	SRU_1954	SRU_1007	Cell division ABC transporter, permease protein FtsX, putative; Identified by match to protein family HMM PF02687; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	0.997
SRU_2851	ftsE	SRU_2851	SRU_1007	ABC transporter permease protein; Identified by match to protein family HMM PF02687.	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	0.906
SRU_2851	ybjZ	SRU_2851	SRU_2852	ABC transporter permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF02687.	0.688
ftsE	SRU_0294	SRU_1007	SRU_0294	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005.	0.467
ftsE	SRU_0908	SRU_1007	SRU_0908	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.792
ftsE	SRU_1005	SRU_1007	SRU_1005	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	Dhh family/dhha1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	0.511
ftsE	SRU_1602	SRU_1007	SRU_1602	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	M23 peptidase domain protein; Identified by match to protein family HMM PF01551.	0.882
ftsE	SRU_1954	SRU_1007	SRU_1954	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	Cell division ABC transporter, permease protein FtsX, putative; Identified by match to protein family HMM PF02687; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.997
ftsE	SRU_2851	SRU_1007	SRU_2851	Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter permease protein; Identified by match to protein family HMM PF02687.	0.906