STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1124Membrane protein, putative; Identified by match to protein family HMM PF03739. (410 aa)    
Predicted Functional Partners:
SRU_1362
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.985
SRU_2087
Membrane protein, putative; Identified by match to protein family HMM PF03739.
 
 
  0.964
SRU_0294
ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005.
 
 
 0.958
SRU_1846
Outer membrane protein, putative; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
 
     0.741
SRU_0927
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.703
SRU_1587
Putative biopolymer transport protein; Identified by match to protein family HMM PF01618.
  
     0.669
SRU_1123
Cystathionine beta-synthase; Identified by match to protein family HMM PF00291; match to protein family HMM PF00571; match to protein family HMM TIGR01137.
       0.625
SRU_2850
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.607
sucC
succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
       0.572
SRU_1681
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
     0.567
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.