STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1141alanyl-tRNA synthetase; Identified by match to protein family HMM PF07973. (260 aa)    
Predicted Functional Partners:
SRU_1142
GHMP kinases putative ATP-binding protein; Identified by match to protein family HMM PF00288.
 
     0.664
cysS
cysteinyl-tRNA synthetase; Identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.508
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
   
 0.480
SRU_0311
NosF protein; Identified by match to protein family HMM PF00005.
  
     0.476
SRU_2523
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.476
SRU_0792
Lipoprotein-releasing system ATP-binding protein lolD; Identified by match to protein family HMM PF00005.
  
     0.456
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
  
     0.438
proV-2
Choline transporter; Identified by match to protein family HMM PF00005.
  
     0.428
SRU_0294
ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005.
  
    0.403
SRU_1140
Hypothetical protein; Identified by Glimmer2; putative.
       0.403
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.