node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SRU_0538 | SRU_1441 | SRU_0538 | SRU_1441 | ATP-dependent DNA helicase pcrA; Identified by match to protein family HMM PF00580. | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | 0.712 |
SRU_0538 | uvrB | SRU_0538 | SRU_1160 | ATP-dependent DNA helicase pcrA; Identified by match to protein family HMM PF00580. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.750 |
SRU_0538 | uvrC | SRU_0538 | SRU_1580 | ATP-dependent DNA helicase pcrA; Identified by match to protein family HMM PF00580. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.537 |
SRU_0718 | SRU_1441 | SRU_0718 | SRU_1441 | Probable ATP-dependent DNA helicase; Identified by match to protein family HMM PF00580. | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | 0.720 |
SRU_0718 | uvrA | SRU_0718 | SRU_0449 | Probable ATP-dependent DNA helicase; Identified by match to protein family HMM PF00580. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.418 |
SRU_0718 | uvrA-2 | SRU_0718 | SRU_2387 | Probable ATP-dependent DNA helicase; Identified by match to protein family HMM PF00580. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.422 |
SRU_0718 | uvrB | SRU_0718 | SRU_1160 | Probable ATP-dependent DNA helicase; Identified by match to protein family HMM PF00580. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.772 |
SRU_0718 | uvrC | SRU_0718 | SRU_1580 | Probable ATP-dependent DNA helicase; Identified by match to protein family HMM PF00580. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.540 |
SRU_1441 | SRU_0538 | SRU_1441 | SRU_0538 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | ATP-dependent DNA helicase pcrA; Identified by match to protein family HMM PF00580. | 0.712 |
SRU_1441 | SRU_0718 | SRU_1441 | SRU_0718 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | Probable ATP-dependent DNA helicase; Identified by match to protein family HMM PF00580. | 0.720 |
SRU_1441 | SRU_2315 | SRU_1441 | SRU_2315 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | DNA helicase II; Identified by match to protein family HMM PF00580; match to protein family HMM PF00929. | 0.732 |
SRU_1441 | ftsK | SRU_1441 | SRU_1619 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | Identified by match to protein family HMM PF01580. | 0.473 |
SRU_1441 | uvrA | SRU_1441 | SRU_0449 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.873 |
SRU_1441 | uvrA-2 | SRU_1441 | SRU_2387 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.871 |
SRU_1441 | uvrB | SRU_1441 | SRU_1160 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.982 |
SRU_1441 | uvrd | SRU_1441 | SRU_0513 | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00580. | 0.737 |
SRU_2315 | SRU_1441 | SRU_2315 | SRU_1441 | DNA helicase II; Identified by match to protein family HMM PF00580; match to protein family HMM PF00929. | Exonuclease family; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151. | 0.732 |
SRU_2315 | ftsK | SRU_2315 | SRU_1619 | DNA helicase II; Identified by match to protein family HMM PF00580; match to protein family HMM PF00929. | Identified by match to protein family HMM PF01580. | 0.453 |
SRU_2315 | uvrA | SRU_2315 | SRU_0449 | DNA helicase II; Identified by match to protein family HMM PF00580; match to protein family HMM PF00929. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.594 |
SRU_2315 | uvrA-2 | SRU_2315 | SRU_2387 | DNA helicase II; Identified by match to protein family HMM PF00580; match to protein family HMM PF00929. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.594 |