STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1183Putative membrane efflux protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (440 aa)    
Predicted Functional Partners:
SRU_1182
Acriflavine resistance protein (cation efflux system); Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.902
SRU_2850
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
   0.756
SRU_0927
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
   0.725
ybjZ
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF02687.
 
  
 0.713
SRU_2851
ABC transporter permease protein; Identified by match to protein family HMM PF02687.
 
  
 0.704
SRU_1978
Outer membrane efflux family protein, putative; Identified by match to protein family HMM PF02321.
 
   0.694
SRU_0925
Multidrug resistance protein, putative; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.677
SRU_0085
Transporter, AcrB/D/F family; Identified by match to protein family HMM PF00873; match to protein family HMM PF01849; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.665
SRU_0725
Multidrug resistance protein, putative; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.646
SRU_2826
Cation efflux system protein czcA; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  
 0.640
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.