STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1228Aldehyde dehydrogenase, mitochondrial precursor; Identified by match to protein family HMM PF00171. (529 aa)    
Predicted Functional Partners:
SRU_1229
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171.
    
0.983
SRU_1227
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
 
 0.946
acs
acetyl-CoA synthase; Identified by match to protein family HMM PF00501.
   
 0.933
acs-2
acetyl-CoA synthetase; Identified by match to protein family HMM PF00501.
   
 0.933
yfcX
Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.929
SRU_1456
Probable aldehyde dehydrogenase aldX; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.925
SRU_1267
Aldehyde reductase; Identified by match to protein family HMM PF00248.
 
 
 0.916
SRU_1925
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
   
 0.911
SRU_0710
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.
 
 
 0.910
SRU_0427
Amine oxidase, flavin-containing; Identified by match to protein family HMM PF01593.
     
 0.906
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.