SRU_1268 protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SRU_1268

Probable class-V aminotransferase; Identified by match to protein family HMM PF00266. (442 aa)

Predicted Functional Partners:

sufE

0.751

sufC

0.749

sufD

0.694

sufB

0.694

metE

0.557

SRU_1267

0.476

SRU_0443

0.424

SRU_0840

0.424

SRU_0954

0.424

SRU_1957

0.424

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0443	SRU_1268	SRU_0443	SRU_1268	Dioxygenase, putative; Identified by match to protein family HMM PF03372.	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	0.424
SRU_0840	SRU_1268	SRU_0840	SRU_1268	Identified by match to protein family HMM PF03372.	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	0.424
SRU_0954	SRU_1268	SRU_0954	SRU_1268	Identified by match to protein family HMM PF03372.	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	0.424
SRU_1267	SRU_1268	SRU_1267	SRU_1268	Aldehyde reductase; Identified by match to protein family HMM PF00248.	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	0.476
SRU_1267	metE	SRU_1267	SRU_1269	Aldehyde reductase; Identified by match to protein family HMM PF00248.	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.	0.400
SRU_1268	SRU_0443	SRU_1268	SRU_0443	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	Dioxygenase, putative; Identified by match to protein family HMM PF03372.	0.424
SRU_1268	SRU_0840	SRU_1268	SRU_0840	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	Identified by match to protein family HMM PF03372.	0.424
SRU_1268	SRU_0954	SRU_1268	SRU_0954	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	Identified by match to protein family HMM PF03372.	0.424
SRU_1268	SRU_1267	SRU_1268	SRU_1267	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	Aldehyde reductase; Identified by match to protein family HMM PF00248.	0.476
SRU_1268	SRU_1957	SRU_1268	SRU_1957	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	Identified by match to protein family HMM PF03372.	0.424
SRU_1268	metE	SRU_1268	SRU_1269	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.	0.557
SRU_1268	sufB	SRU_1268	SRU_1387	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.	0.694
SRU_1268	sufC	SRU_1268	SRU_1386	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.	0.749
SRU_1268	sufD	SRU_1268	SRU_1385	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.	0.694
SRU_1268	sufE	SRU_1268	SRU_1383	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	Fe-S metabolism associated domain subfamily; Identified by match to protein family HMM PF02657.	0.751
SRU_1957	SRU_1268	SRU_1957	SRU_1268	Identified by match to protein family HMM PF03372.	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	0.424
metE	SRU_1267	SRU_1269	SRU_1267	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.	Aldehyde reductase; Identified by match to protein family HMM PF00248.	0.400
metE	SRU_1268	SRU_1269	SRU_1268	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	0.557
sufB	SRU_1268	SRU_1387	SRU_1268	FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.	Probable class-V aminotransferase; Identified by match to protein family HMM PF00266.	0.694
sufB	sufC	SRU_1387	SRU_1386	FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.	FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.	0.999