STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1272Bacterial type II secretion system protein F domain; Identified by match to protein family HMM PF00482. (429 aa)    
Predicted Functional Partners:
SRU_1273
Type IV pilin; Identified by match to protein family HMM PF00437.
 
 0.997
pilT
Twitching motility protein PilT; Identified by match to protein family HMM PF00437.
 
  
 0.881
SRU_1280
General (Type II) secretion pathway (GSP) D protein, putative; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family.
 
  
 0.872
SRU_0474
Conserved hypothetical protein.
 
  
 0.830
SRU_1288
S23 ribosomal protein; Identified by match to protein family HMM PF05635.
  
  
 0.806
SRU_0014
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
 
  
 0.795
SRU_1278
Fimbrial assembly protein (PilN); Identified by match to protein family HMM PF05137.
   
 
 0.786
SRU_1533
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.631
SRU_1534
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.631
ssb
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
    0.588
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.