STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1295Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551. (397 aa)    
Predicted Functional Partners:
SRU_1296
Asparaginase superfamily; Identified by match to protein family HMM PF01112.
       0.773
SRU_1602
M23 peptidase domain protein; Identified by match to protein family HMM PF01551.
 
   
 0.732
SRU_0909
Protein of unknown function, DUF583 family; Identified by match to protein family HMM PF04519.
 
   
 0.598
SRU_2497
N-acetylmuramoyl-L-alanine amidase-like protein; Identified by match to protein family HMM PF01520.
 
   
 0.526
SRU_0686
Transglycosylase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.
  
   
 0.512
SRU_0291
Peptidoglycan N-acetylmuramoylhydrolase; Identified by match to protein family HMM PF01464; match to protein family HMM PF01476.
 
   
 0.483
SRU_1679
Conserved hypothetical protein.
  
     0.477
SRU_1294
ATP:cob(I)alamin adenosyltransferase, putative; Identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.473
SRU_1678
Conserved hypothetical protein.
  
     0.450
SRU_2222
Integral membrane protein TerC family; Identified by match to protein family HMM PF03741.
      0.443
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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