SRU_1341 protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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experimentally determined

co-expression

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gene co-occurrence

gene fusions

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[Homology]

Score

SRU_1341

Identified by match to protein family HMM PF00753. (274 aa)

Predicted Functional Partners:

SRU_1342

0.453

SRU_2042

0.415

rnc

0.404

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_1341	SRU_1342	SRU_1341	SRU_1342	Identified by match to protein family HMM PF00753.	Inositol monophosphatase family; Identified by match to protein family HMM PF00459.	0.453
SRU_1341	SRU_2042	SRU_1341	SRU_2042	Identified by match to protein family HMM PF00753.	MoeZ/MoeB domain family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.	0.415
SRU_1341	rnc	SRU_1341	SRU_1343	Identified by match to protein family HMM PF00753.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.404
SRU_1342	SRU_1341	SRU_1342	SRU_1341	Inositol monophosphatase family; Identified by match to protein family HMM PF00459.	Identified by match to protein family HMM PF00753.	0.453
SRU_1342	rnc	SRU_1342	SRU_1343	Inositol monophosphatase family; Identified by match to protein family HMM PF00459.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.601
SRU_2042	SRU_1341	SRU_2042	SRU_1341	MoeZ/MoeB domain family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.	Identified by match to protein family HMM PF00753.	0.415
rnc	SRU_1341	SRU_1343	SRU_1341	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Identified by match to protein family HMM PF00753.	0.404
rnc	SRU_1342	SRU_1343	SRU_1342	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Inositol monophosphatase family; Identified by match to protein family HMM PF00459.	0.601