STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1345Hypothetical protein; Identified by Glimmer2; putative. (298 aa)    
Predicted Functional Partners:
SRU_1678
Conserved hypothetical protein.
  
     0.757
SRU_1671
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.756
dacA
Conserved hypothetical protein TIGR00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.752
SRU_0788
Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.749
SRU_1679
Conserved hypothetical protein.
  
     0.749
SRU_2251
TonB-dependent receptor domain protein; Identified by match to protein family HMM PF00593.
  
     0.719
SRU_0174
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.718
cvpA
Identified by match to protein family HMM PF02674.
  
     0.684
SRU_2543
Outer membrane protein transport protein (OMPP1/FadL/TodX); Identified by match to protein family HMM PF03349.
  
     0.668
SRU_2736
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.654
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.