SRU_1380 protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Experiments

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[Homology]

Score

SRU_1380

Identified by match to protein family HMM PF00903. (138 aa)

Predicted Functional Partners:

pilR

0.668

SRU_1382

0.465

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_1380	SRU_1382	SRU_1380	SRU_1382	Identified by match to protein family HMM PF00903.	Domain of unknown function domain protein; Identified by match to protein family HMM PF01883.	0.465
SRU_1380	pilR	SRU_1380	SRU_1381	Identified by match to protein family HMM PF00903.	Two-component system regulatory protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	0.668
SRU_1382	SRU_1380	SRU_1382	SRU_1380	Domain of unknown function domain protein; Identified by match to protein family HMM PF01883.	Identified by match to protein family HMM PF00903.	0.465
SRU_1382	pilR	SRU_1382	SRU_1381	Domain of unknown function domain protein; Identified by match to protein family HMM PF01883.	Two-component system regulatory protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	0.490
pilR	SRU_1380	SRU_1381	SRU_1380	Two-component system regulatory protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	Identified by match to protein family HMM PF00903.	0.668
pilR	SRU_1382	SRU_1381	SRU_1382	Two-component system regulatory protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	Domain of unknown function domain protein; Identified by match to protein family HMM PF01883.	0.490