STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1402K+-dependent Na+/Ca+ exchanger-like protein; Identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367. (317 aa)    
Predicted Functional Partners:
SRU_1401
Subtilisin-like serine proteases; Identified by match to protein family HMM PF00082.
  
    0.777
SRU_1400
Hypothetical protein; Identified by Glimmer2; putative.
       0.757
SRU_2028
Putative cation transporter; Identified by match to protein family HMM PF01699.
  
     0.620
SRU_2256
Transporter, monovalent cation:proton antiporter-2 (CPA2) family; Identified by match to protein family HMM PF00999; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
 
 
 0.487
SRU_1399
N-acyl-L-amino acid amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.
       0.454
SRU_1403
Cytidine and deoxycytidylate deaminase zinc-binding region domain protein; Identified by match to protein family HMM PF00383.
       0.441
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.