STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1427Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. (366 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Identified by match to protein family HMM PF00494.
 
  
 0.848
SRU_1428
Hypothetical protein; Identified by Glimmer2; putative.
  
   0.779
SRU_1429
Putative acyltransferase.
  
  
 0.712
SRU_1431
Conserved hypothetical protein.
 
     0.675
SRU_1426
Uncharacterized conserved membrane protein.
       0.648
SRU_1002
Sulfotransferase domain superfamily; Identified by match to protein family HMM PF00685.
  
  
 0.588
SRU_1865
Polysaccharide deacetylase; Identified by match to protein family HMM PF01522.
  
  
 0.588
SRU_1425
Identified by match to protein family HMM PF02016.
       0.536
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.470
crtI
Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
 
     0.447
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.