Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SRU_1478 | crtB | SRU_1478 | SRU_1430 | Hypothetical protein; Identified by Glimmer2; putative. | Phytoene synthase; Identified by match to protein family HMM PF00494. | 0.923 |
| SRU_1478 | crtI | SRU_1478 | SRU_2060 | Hypothetical protein; Identified by Glimmer2; putative. | Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. | 0.957 |
| SRU_1478 | crtO | SRU_1478 | SRU_1502 | Hypothetical protein; Identified by Glimmer2; putative. | Beta-carotene ketolase; Identified by similarity to GB:BAC88335.1; match to protein family HMM PF01266. | 0.596 |
| SRU_1500 | crtB | SRU_1500 | SRU_1430 | Xanthorhodopsin; Identified by match to protein family HMM PF01036. | Phytoene synthase; Identified by match to protein family HMM PF00494. | 0.572 |
| SRU_1500 | crtI | SRU_1500 | SRU_2060 | Xanthorhodopsin; Identified by match to protein family HMM PF01036. | Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. | 0.634 |
| SRU_1500 | crtO | SRU_1500 | SRU_1502 | Xanthorhodopsin; Identified by match to protein family HMM PF01036. | Beta-carotene ketolase; Identified by similarity to GB:BAC88335.1; match to protein family HMM PF01266. | 0.713 |
| SRU_1500 | crtY | SRU_1500 | SRU_1501 | Xanthorhodopsin; Identified by match to protein family HMM PF01036. | Licopene beta-cyclase; Identified by similarity to GB:CAB86388.1. | 0.786 |
| SRU_1500 | miaA | SRU_1500 | SRU_1498 | Xanthorhodopsin; Identified by match to protein family HMM PF01036. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.457 |
| crtB | SRU_1478 | SRU_1430 | SRU_1478 | Phytoene synthase; Identified by match to protein family HMM PF00494. | Hypothetical protein; Identified by Glimmer2; putative. | 0.923 |
| crtB | SRU_1500 | SRU_1430 | SRU_1500 | Phytoene synthase; Identified by match to protein family HMM PF00494. | Xanthorhodopsin; Identified by match to protein family HMM PF01036. | 0.572 |
| crtB | crtI | SRU_1430 | SRU_2060 | Phytoene synthase; Identified by match to protein family HMM PF00494. | Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. | 0.997 |
| crtB | crtO | SRU_1430 | SRU_1502 | Phytoene synthase; Identified by match to protein family HMM PF00494. | Beta-carotene ketolase; Identified by similarity to GB:BAC88335.1; match to protein family HMM PF01266. | 0.911 |
| crtB | crtY | SRU_1430 | SRU_1501 | Phytoene synthase; Identified by match to protein family HMM PF00494. | Licopene beta-cyclase; Identified by similarity to GB:CAB86388.1. | 0.855 |
| crtB | miaA | SRU_1430 | SRU_1498 | Phytoene synthase; Identified by match to protein family HMM PF00494. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.463 |
| crtI | SRU_1478 | SRU_2060 | SRU_1478 | Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. | Hypothetical protein; Identified by Glimmer2; putative. | 0.957 |
| crtI | SRU_1500 | SRU_2060 | SRU_1500 | Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. | Xanthorhodopsin; Identified by match to protein family HMM PF01036. | 0.634 |
| crtI | crtB | SRU_2060 | SRU_1430 | Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. | Phytoene synthase; Identified by match to protein family HMM PF00494. | 0.997 |
| crtI | crtO | SRU_2060 | SRU_1502 | Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. | Beta-carotene ketolase; Identified by similarity to GB:BAC88335.1; match to protein family HMM PF01266. | 0.453 |
| crtI | crtY | SRU_2060 | SRU_1501 | Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. | Licopene beta-cyclase; Identified by similarity to GB:CAB86388.1. | 0.983 |
| crtO | SRU_1478 | SRU_1502 | SRU_1478 | Beta-carotene ketolase; Identified by similarity to GB:BAC88335.1; match to protein family HMM PF01266. | Hypothetical protein; Identified by Glimmer2; putative. | 0.596 |
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