Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SRU_1567 | SRU_1568 | SRU_1567 | SRU_1568 | Conserved hypothetical protein. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.557 |
SRU_1568 | SRU_1567 | SRU_1568 | SRU_1567 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Conserved hypothetical protein. | 0.557 |
SRU_1568 | SRU_1569 | SRU_1568 | SRU_1569 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Outer membrane lipoprotein carrier protein LolA; Identified by match to protein family HMM PF03548. | 0.511 |
SRU_1568 | SRU_1570 | SRU_1568 | SRU_1570 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Conserved hypothetical protein; Identified by match to protein family HMM TIGR00374. | 0.405 |
SRU_1568 | cinA | SRU_1568 | SRU_1303 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Competence/damage-inducible protein CinA; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family. | 0.479 |
SRU_1568 | rtcB | SRU_1568 | SRU_2493 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | Identified by match to protein family HMM PF01139; Belongs to the RtcB family. | 0.449 |
SRU_1569 | SRU_1568 | SRU_1569 | SRU_1568 | Outer membrane lipoprotein carrier protein LolA; Identified by match to protein family HMM PF03548. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.511 |
SRU_1569 | SRU_1570 | SRU_1569 | SRU_1570 | Outer membrane lipoprotein carrier protein LolA; Identified by match to protein family HMM PF03548. | Conserved hypothetical protein; Identified by match to protein family HMM TIGR00374. | 0.667 |
SRU_1570 | SRU_1568 | SRU_1570 | SRU_1568 | Conserved hypothetical protein; Identified by match to protein family HMM TIGR00374. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.405 |
SRU_1570 | SRU_1569 | SRU_1570 | SRU_1569 | Conserved hypothetical protein; Identified by match to protein family HMM TIGR00374. | Outer membrane lipoprotein carrier protein LolA; Identified by match to protein family HMM PF03548. | 0.667 |
cinA | SRU_1568 | SRU_1303 | SRU_1568 | Competence/damage-inducible protein CinA; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.479 |
rtcB | SRU_1568 | SRU_2493 | SRU_1568 | Identified by match to protein family HMM PF01139; Belongs to the RtcB family. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.449 |