SRU_1601 protein (Salinibacter ruber) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

SRU_1601

Hypothetical protein; Identified by Glimmer2; putative. (263 aa)

Predicted Functional Partners:

SRU_0019

0.682

SRU_1516

0.682

SRU_2497

0.673

SRU_1600

0.639

SRU_1602

0.602

lolD

0.577

SRU_1331

0.577

SRU_2848

0.577

lpdA

0.425

SRU_1599

0.405

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0019	SRU_1331	SRU_0019	SRU_1331	Membrane protein, putative; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.870
SRU_0019	SRU_1516	SRU_0019	SRU_1516	Membrane protein, putative; Identified by match to protein family HMM PF02687.	Putative permease domain protein; Identified by match to protein family HMM PF02687.	0.925
SRU_0019	SRU_1601	SRU_0019	SRU_1601	Membrane protein, putative; Identified by match to protein family HMM PF02687.	Hypothetical protein; Identified by Glimmer2; putative.	0.682
SRU_0019	SRU_2848	SRU_0019	SRU_2848	Membrane protein, putative; Identified by match to protein family HMM PF02687.	ATP-binding protein of ABC transporter; Identified by match to protein family HMM PF00005.	0.874
SRU_0019	lolD	SRU_0019	SRU_1203	Membrane protein, putative; Identified by match to protein family HMM PF02687.	Lipoprotein-releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	0.984
SRU_1331	SRU_0019	SRU_1331	SRU_0019	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Membrane protein, putative; Identified by match to protein family HMM PF02687.	0.870
SRU_1331	SRU_1516	SRU_1331	SRU_1516	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative permease domain protein; Identified by match to protein family HMM PF02687.	0.874
SRU_1331	SRU_1601	SRU_1331	SRU_1601	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Hypothetical protein; Identified by Glimmer2; putative.	0.577
SRU_1516	SRU_0019	SRU_1516	SRU_0019	Putative permease domain protein; Identified by match to protein family HMM PF02687.	Membrane protein, putative; Identified by match to protein family HMM PF02687.	0.925
SRU_1516	SRU_1331	SRU_1516	SRU_1331	Putative permease domain protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.874
SRU_1516	SRU_1601	SRU_1516	SRU_1601	Putative permease domain protein; Identified by match to protein family HMM PF02687.	Hypothetical protein; Identified by Glimmer2; putative.	0.682
SRU_1516	SRU_2848	SRU_1516	SRU_2848	Putative permease domain protein; Identified by match to protein family HMM PF02687.	ATP-binding protein of ABC transporter; Identified by match to protein family HMM PF00005.	0.881
SRU_1516	lolD	SRU_1516	SRU_1203	Putative permease domain protein; Identified by match to protein family HMM PF02687.	Lipoprotein-releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	0.983
SRU_1599	SRU_1600	SRU_1599	SRU_1600	CBS domain pair protein; Identified by match to protein family HMM PF00571.	Tetratricopeptide repeat family; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.561
SRU_1599	SRU_1601	SRU_1599	SRU_1601	CBS domain pair protein; Identified by match to protein family HMM PF00571.	Hypothetical protein; Identified by Glimmer2; putative.	0.405
SRU_1599	lpdA	SRU_1599	SRU_1603	CBS domain pair protein; Identified by match to protein family HMM PF00571.	Dihydrolipoamide dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.	0.505
SRU_1600	SRU_1599	SRU_1600	SRU_1599	Tetratricopeptide repeat family; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	CBS domain pair protein; Identified by match to protein family HMM PF00571.	0.561
SRU_1600	SRU_1601	SRU_1600	SRU_1601	Tetratricopeptide repeat family; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by Glimmer2; putative.	0.639
SRU_1600	SRU_1602	SRU_1600	SRU_1602	Tetratricopeptide repeat family; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	M23 peptidase domain protein; Identified by match to protein family HMM PF01551.	0.540
SRU_1601	SRU_0019	SRU_1601	SRU_0019	Hypothetical protein; Identified by Glimmer2; putative.	Membrane protein, putative; Identified by match to protein family HMM PF02687.	0.682