STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1602M23 peptidase domain protein; Identified by match to protein family HMM PF01551. (412 aa)    
Predicted Functional Partners:
SRU_1954
Cell division ABC transporter, permease protein FtsX, putative; Identified by match to protein family HMM PF02687; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.920
SRU_0908
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
     0.748
SRU_1295
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
 
   
 0.733
SRU_2497
N-acetylmuramoyl-L-alanine amidase-like protein; Identified by match to protein family HMM PF01520.
 
  
 0.621
ftsE
Cell-division ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   
 0.619
SRU_1601
Hypothetical protein; Identified by Glimmer2; putative.
       0.602
SRU_0686
Transglycosylase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.
  
     0.564
SRU_0818
TPR-containing protein Mql1, putative; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
   
   0.544
SRU_1699
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.544
lpdA
Dihydrolipoamide dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.
       0.541
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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