SRU_1632 protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SRU_1632

PspC domain family; Identified by match to protein family HMM PF04024. (223 aa)

Predicted Functional Partners:

SRU_1164

0.966

cheB

0.721

SRU_0678

0.717

SRU_0836

0.636

SRU_1631

0.635

SRU_1953

0.633

SRU_0483

0.587

SRU_1892

0.578

SRU_0144

0.557

htrA

0.545

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0144	SRU_0483	SRU_0144	SRU_0483	Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495.	0.970
SRU_0144	SRU_0678	SRU_0144	SRU_0678	Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	0.507
SRU_0144	SRU_0836	SRU_0144	SRU_0836	Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.	0.974
SRU_0144	SRU_1164	SRU_0144	SRU_1164	Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Conserved hypothetical protein; Identified by match to protein family HMM PF04012.	0.424
SRU_0144	SRU_1632	SRU_0144	SRU_1632	Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	PspC domain family; Identified by match to protein family HMM PF04024.	0.557
SRU_0144	cheB	SRU_0144	SRU_0336	Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229.	0.709
SRU_0144	htrA	SRU_0144	SRU_1612	Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Serine protease; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037.	0.661
SRU_0483	SRU_0144	SRU_0483	SRU_0144	Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495.	Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.970
SRU_0483	SRU_0678	SRU_0483	SRU_0678	Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495.	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	0.991
SRU_0483	SRU_0836	SRU_0483	SRU_0836	Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.	0.967
SRU_0483	SRU_1164	SRU_0483	SRU_1164	Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495.	Conserved hypothetical protein; Identified by match to protein family HMM PF04012.	0.493
SRU_0483	SRU_1632	SRU_0483	SRU_1632	Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495.	PspC domain family; Identified by match to protein family HMM PF04024.	0.587
SRU_0483	cheB	SRU_0483	SRU_0336	Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495.	Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229.	0.994
SRU_0678	SRU_0144	SRU_0678	SRU_0144	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.507
SRU_0678	SRU_0483	SRU_0678	SRU_0483	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495.	0.991
SRU_0678	SRU_0836	SRU_0678	SRU_0836	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.	0.923
SRU_0678	SRU_1164	SRU_0678	SRU_1164	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	Conserved hypothetical protein; Identified by match to protein family HMM PF04012.	0.660
SRU_0678	SRU_1632	SRU_0678	SRU_1632	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	PspC domain family; Identified by match to protein family HMM PF04024.	0.717
SRU_0678	cheB	SRU_0678	SRU_0336	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229.	0.620
SRU_0836	SRU_0144	SRU_0836	SRU_0144	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.	Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.974