STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1798Hypothetical protein; Identified by Glimmer2; putative. (304 aa)    
Predicted Functional Partners:
SRU_1797
PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639.
 
     0.801
SRU_1799
Peptidylprolyl cis-trans isomerase; Identified by match to protein family HMM PF00639.
 
     0.716
SRU_2431
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein; Identified by match to protein family HMM PF00160; match to protein family HMM PF02985; match to protein family HMM PF03130.
  
 0.488
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.470
moxR
Methanol dehydrogenase regulator; Identified by match to protein family HMM PF07726.
       0.456
SRU_2167
Outer membrane protein, OMP85 family, putative; Identified by match to protein family HMM PF01103.
  
   0.443
SRU_1028
Tetratricopeptide repeat family; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
   0.435
SRU_0478
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.404
SRU_0931
Putative thiosulfate sulfurtransferase, putative; Identified by match to protein family HMM PF00581.
  
     0.402
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.