STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1799Peptidylprolyl cis-trans isomerase; Identified by match to protein family HMM PF00639. (464 aa)    
Predicted Functional Partners:
SRU_1797
PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639.
 
     0.894
SRU_1846
Outer membrane protein, putative; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
 
 0.815
SRU_1028
Tetratricopeptide repeat family; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
   0.785
SRU_0784
Conserved hypothetical protein.
 
  
 0.778
SRU_0507
Conserved hypothetical protein.
  
    0.759
SRU_1845
Outer membrane protein OmpH, putative.
  
  
 0.755
SRU_2090
Membrane protein, putative.
  
     0.749
SRU_1416
Peptidylprolyl cis-trans isomerase; Identified by match to protein family HMM PF00639.
  
     0.730
SRU_1798
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.716
SRU_1584
Tetratricopeptide repeat family; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
 
 0.713
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.