STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1846Outer membrane protein, putative; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244. (844 aa)    
Predicted Functional Partners:
SRU_1845
Outer membrane protein OmpH, putative.
 
  
 0.947
uppS
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
    0.902
SRU_2073
Tetratricopeptide repeat domain protein.
 
 
 0.820
SRU_1844
Outer membrane protein (OmpH-like); Identified by match to protein family HMM PF03938.
 
  
 0.818
SRU_1848
Membrane-associated zinc metalloprotease, putative; Identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054.
 
  
 0.806
SRU_1799
Peptidylprolyl cis-trans isomerase; Identified by match to protein family HMM PF00639.
  
 
 0.790
SRU_0784
Conserved hypothetical protein.
  
  
 0.784
SRU_1201
Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
    0.754
SRU_0507
Conserved hypothetical protein.
  
     0.753
SRU_0029
Conserved hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
   0.750
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.