STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
idiIsopentenyl-diphosphate delta-isomerase, type 1; Identified by match to protein family HMM PF00293; match to protein family HMM TIGR02150. (209 aa)    
Predicted Functional Partners:
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
   
 0.975
idsA
Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
 
 0.924
crtB
Phytoene synthase; Identified by match to protein family HMM PF00494.
 
  
 0.696
crtI
Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
 
  
 0.576
SRU_2422
Hydroxymethylglutaryl-coenzyme A reductase; Identified by match to protein family HMM PF00368.
  
  
 0.560
SRU_0847
Trehalose synthase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456.
     
 0.498
fdx
Ferredoxin; Identified by match to protein family HMM PF00111.
       0.484
SRU_0773
Conserved hypothetical protein.
  
  
 0.479
SRU_0743
Phytoene dehydrogenase and related proteins; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
 
  
 0.444
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.436
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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