SRU_1958 protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

SRU_1958

Identified by match to protein family HMM PF00300. (241 aa)

Predicted Functional Partners:

SRU_0501

0.692

SRU_1143

0.596

SRU_1957

0.495

tal

0.487

gltB

0.471

ymxG

0.470

SRU_2112

0.451

SRU_2337

0.439

SRU_1244

0.428

SRU_1339

0.406

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0501	SRU_1143	SRU_0501	SRU_1143	Conserved hypothetical protein.	Penicillin amidase superfamily; Identified by match to protein family HMM PF01804.	0.439
SRU_0501	SRU_1958	SRU_0501	SRU_1958	Conserved hypothetical protein.	Identified by match to protein family HMM PF00300.	0.692
SRU_0501	ymxG	SRU_0501	SRU_1245	Conserved hypothetical protein.	Processing protease; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.	0.555
SRU_1143	SRU_0501	SRU_1143	SRU_0501	Penicillin amidase superfamily; Identified by match to protein family HMM PF01804.	Conserved hypothetical protein.	0.439
SRU_1143	SRU_1244	SRU_1143	SRU_1244	Penicillin amidase superfamily; Identified by match to protein family HMM PF01804.	Peptidase M16 inactive domain family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.	0.411
SRU_1143	SRU_1958	SRU_1143	SRU_1958	Penicillin amidase superfamily; Identified by match to protein family HMM PF01804.	Identified by match to protein family HMM PF00300.	0.596
SRU_1143	ymxG	SRU_1143	SRU_1245	Penicillin amidase superfamily; Identified by match to protein family HMM PF01804.	Processing protease; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.	0.428
SRU_1244	SRU_1143	SRU_1244	SRU_1143	Peptidase M16 inactive domain family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.	Penicillin amidase superfamily; Identified by match to protein family HMM PF01804.	0.411
SRU_1244	SRU_1958	SRU_1244	SRU_1958	Peptidase M16 inactive domain family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.	Identified by match to protein family HMM PF00300.	0.428
SRU_1244	ymxG	SRU_1244	SRU_1245	Peptidase M16 inactive domain family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.	Processing protease; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.	0.962
SRU_1339	SRU_1958	SRU_1339	SRU_1958	Conserved hypothetical protein; Identified by match to protein family HMM PF01937.	Identified by match to protein family HMM PF00300.	0.406
SRU_1957	SRU_1958	SRU_1957	SRU_1958	Identified by match to protein family HMM PF03372.	Identified by match to protein family HMM PF00300.	0.495
SRU_1958	SRU_0501	SRU_1958	SRU_0501	Identified by match to protein family HMM PF00300.	Conserved hypothetical protein.	0.692
SRU_1958	SRU_1143	SRU_1958	SRU_1143	Identified by match to protein family HMM PF00300.	Penicillin amidase superfamily; Identified by match to protein family HMM PF01804.	0.596
SRU_1958	SRU_1244	SRU_1958	SRU_1244	Identified by match to protein family HMM PF00300.	Peptidase M16 inactive domain family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.	0.428
SRU_1958	SRU_1339	SRU_1958	SRU_1339	Identified by match to protein family HMM PF00300.	Conserved hypothetical protein; Identified by match to protein family HMM PF01937.	0.406
SRU_1958	SRU_1957	SRU_1958	SRU_1957	Identified by match to protein family HMM PF00300.	Identified by match to protein family HMM PF03372.	0.495
SRU_1958	SRU_2112	SRU_1958	SRU_2112	Identified by match to protein family HMM PF00300.	Conserved hypothetical protein TIGR00486; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.	0.451
SRU_1958	SRU_2337	SRU_1958	SRU_2337	Identified by match to protein family HMM PF00300.	Identified by match to protein family HMM TIGR02436.	0.439
SRU_1958	gltB	SRU_1958	SRU_1169	Identified by match to protein family HMM PF00300.	Glutamate synthase, large subunit; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.471