STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1978Outer membrane efflux family protein, putative; Identified by match to protein family HMM PF02321. (470 aa)    
Predicted Functional Partners:
SRU_1979
Acriflavin resistance protein AcrE, putative; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.991
SRU_1980
Transporter, AcrB/D/F family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.983
SRU_0083
Cation efflux system protein, putative; Identified by match to protein family HMM PF02321.
  
  
  0.944
SRU_0927
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
  
 
0.928
SRU_2850
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
  
 
0.926
SRU_2751
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
  
 
0.922
SRU_0726
Putative outer membrane protein TolC; Identified by match to protein family HMM PF02321.
  
  
  0.915
SRU_1981
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.874
SRU_1182
Acriflavine resistance protein (cation efflux system); Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.864
SRU_0725
Multidrug resistance protein, putative; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.862
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.