STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_1981Hypothetical protein; Identified by Glimmer2; putative. (108 aa)    
Predicted Functional Partners:
SRU_1978
Outer membrane efflux family protein, putative; Identified by match to protein family HMM PF02321.
 
     0.874
SRU_1980
Transporter, AcrB/D/F family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.851
SRU_1979
Acriflavin resistance protein AcrE, putative; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.824
SRU_1676
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.641
SRU_2480
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.624
SRU_2477
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.606
cvpA
Identified by match to protein family HMM PF02674.
  
     0.593
SRU_2756
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.562
SRU_2752
Conserved hypothetical protein.
  
     0.546
SRU_2476
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.496
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.