STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2015Hypothetical protein; Identified by Glimmer2; putative. (1006 aa)    
Predicted Functional Partners:
SRU_0070
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.691
SRU_2251
TonB-dependent receptor domain protein; Identified by match to protein family HMM PF00593.
 
     0.674
SRU_2847
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.639
SRU_0174
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.613
SRU_0417
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.609
SRU_2736
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.563
SRU_0168
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.540
SRU_0958
TonB family C-terminal domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
   0.498
SRU_2504
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.493
SRU_2230
Nodulation efficiency protein D (NfeD); Identified by match to protein family HMM PF01957.
  
     0.488
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.