Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SRU_2018Conserved hypothetical protein. (287 aa)    
Predicted Functional Partners:
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
    
 0.903
pfkA-2
Phosphofructokinase subfamily; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.
    
 0.903
SRU_2017
Conserved hypothetical protein.
 
  
 0.889
lacD
Tagatose 1,6-diphosphate aldolase; Identified by match to protein family HMM PF04274.
 
     0.837
SRU_2016
Conserved hypothetical protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.639
SRU_0316
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
 
  
 0.466
SRU_2530
Glucosamine-6-phosphate isomerase, putative; Identified by match to protein family HMM PF01182; match to protein family HMM PF02585; match to protein family HMM TIGR00502.
 
   
 0.465
SRU_0533
Phosphoglycolate phosphatase; Identified by match to protein family HMM PF00702.
 
     0.464
SRU_1964
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.408
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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