SRU_2023 protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

SRU_2023

ISSru3, transposase insA; Identified by match to protein family HMM TIGR01199. (92 aa)

Predicted Functional Partners:

SRU_2024

0.946

SRU_0109

0.775

SRU_0713

0.775

SRU_0731

0.775

SRU_1398

0.775

SRU_2336

0.775

SRU_2456

0.775

SRU_2483

0.775

SRU_2704

0.775

SRU_0356

0.540

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SRU_0109	SRU_0356	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	IS982 family transposase; Identified by match to protein family HMM PF01609.	0.419
SRU_0109	SRU_2023	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	ISSru3, transposase insA; Identified by match to protein family HMM TIGR01199.	0.775
SRU_0356	SRU_0109	IS982 family transposase; Identified by match to protein family HMM PF01609.	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	0.419
SRU_0356	SRU_0713	IS982 family transposase; Identified by match to protein family HMM PF01609.	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	0.419
SRU_0356	SRU_0731	IS982 family transposase; Identified by match to protein family HMM PF01609.	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	0.419
SRU_0356	SRU_1398	IS982 family transposase; Identified by match to protein family HMM PF01609.	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	0.419
SRU_0356	SRU_2023	IS982 family transposase; Identified by match to protein family HMM PF01609.	ISSru3, transposase insA; Identified by match to protein family HMM TIGR01199.	0.540
SRU_0356	SRU_2024	IS982 family transposase; Identified by match to protein family HMM PF01609.	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	0.419
SRU_0356	SRU_2336	IS982 family transposase; Identified by match to protein family HMM PF01609.	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	0.419
SRU_0356	SRU_2456	IS982 family transposase; Identified by match to protein family HMM PF01609.	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	0.419
SRU_0356	SRU_2483	IS982 family transposase; Identified by match to protein family HMM PF01609.	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	0.419
SRU_0356	SRU_2704	IS982 family transposase; Identified by match to protein family HMM PF01609.	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	0.419
SRU_0713	SRU_0356	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	IS982 family transposase; Identified by match to protein family HMM PF01609.	0.419
SRU_0713	SRU_2023	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	ISSru3, transposase insA; Identified by match to protein family HMM TIGR01199.	0.775
SRU_0731	SRU_0356	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	IS982 family transposase; Identified by match to protein family HMM PF01609.	0.419
SRU_0731	SRU_2023	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	ISSru3, transposase insA; Identified by match to protein family HMM TIGR01199.	0.775
SRU_1398	SRU_0356	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	IS982 family transposase; Identified by match to protein family HMM PF01609.	0.419
SRU_1398	SRU_2023	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	ISSru3, transposase insA; Identified by match to protein family HMM TIGR01199.	0.775
SRU_2023	SRU_0109	ISSru3, transposase insA; Identified by match to protein family HMM TIGR01199.	ISSru3, transposase insB; Identified by match to protein family HMM PF03400.	0.775
SRU_2023	SRU_0356	ISSru3, transposase insA; Identified by match to protein family HMM TIGR01199.	IS982 family transposase; Identified by match to protein family HMM PF01609.	0.540