STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2030Conserved hypothetical protein. (141 aa)    
Predicted Functional Partners:
SRU_0047
DoxX subfamily, putative; Identified by match to protein family HMM PF07681.
  
     0.627
SRU_0411
DoxX subfamily, putative; Identified by match to protein family HMM PF07681.
  
     0.591
SRU_0103
Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515.
  
    0.585
SRU_2031
Hypothetical protein; Identified by Glimmer2; putative.
       0.547
SRU_1216
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.489
SRU_2029
Conserved hypothetical protein.
       0.469
SRU_0754
Probable outer membrane receptor protein, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.454
SRU_1699
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.423
SRU_1908
Cell division protein, putative; Identified by match to protein family HMM PF00004.
  
  
  0.411
SRU_2486
Conserved hypothetical protein.
 
     0.411
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.