SRU_2040 protein (Salinibacter ruber) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

SRU_2040

Identified by match to protein family HMM PF01398. (145 aa)

Predicted Functional Partners:

glpK

0.980

SRU_2041

0.941

SRU_2042

0.920

SRU_2039

0.916

rpsS

0.899

rpsC

0.892

rpsO

0.883

rpsQ

0.873

rpsE

0.870

rpsG

0.869

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_2039	SRU_2040	SRU_2039	SRU_2040	Cysteine synthase B; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136.	Identified by match to protein family HMM PF01398.	0.916
SRU_2039	SRU_2041	SRU_2039	SRU_2041	Cysteine synthase B; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136.	ThiS family, putative; Identified by match to protein family HMM PF02597.	0.751
SRU_2039	SRU_2042	SRU_2039	SRU_2042	Cysteine synthase B; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136.	MoeZ/MoeB domain family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.	0.696
SRU_2040	SRU_2039	SRU_2040	SRU_2039	Identified by match to protein family HMM PF01398.	Cysteine synthase B; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136.	0.916
SRU_2040	SRU_2041	SRU_2040	SRU_2041	Identified by match to protein family HMM PF01398.	ThiS family, putative; Identified by match to protein family HMM PF02597.	0.941
SRU_2040	SRU_2042	SRU_2040	SRU_2042	Identified by match to protein family HMM PF01398.	MoeZ/MoeB domain family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.	0.920
SRU_2040	glpK	SRU_2040	SRU_1471	Identified by match to protein family HMM PF01398.	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	0.980
SRU_2040	rpsC	SRU_2040	SRU_1041	Identified by match to protein family HMM PF01398.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.892
SRU_2040	rpsE	SRU_2040	SRU_1052	Identified by match to protein family HMM PF01398.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.870
SRU_2040	rpsG	SRU_2040	SRU_1031	Identified by match to protein family HMM PF01398.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.869
SRU_2040	rpsO	SRU_2040	SRU_1774	Identified by match to protein family HMM PF01398.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.883
SRU_2040	rpsQ	SRU_2040	SRU_1044	Identified by match to protein family HMM PF01398.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.873
SRU_2040	rpsS	SRU_2040	SRU_1039	Identified by match to protein family HMM PF01398.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.899
SRU_2041	SRU_2039	SRU_2041	SRU_2039	ThiS family, putative; Identified by match to protein family HMM PF02597.	Cysteine synthase B; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136.	0.751
SRU_2041	SRU_2040	SRU_2041	SRU_2040	ThiS family, putative; Identified by match to protein family HMM PF02597.	Identified by match to protein family HMM PF01398.	0.941
SRU_2041	SRU_2042	SRU_2041	SRU_2042	ThiS family, putative; Identified by match to protein family HMM PF02597.	MoeZ/MoeB domain family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.	0.999
SRU_2042	SRU_2039	SRU_2042	SRU_2039	MoeZ/MoeB domain family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.	Cysteine synthase B; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136.	0.696
SRU_2042	SRU_2040	SRU_2042	SRU_2040	MoeZ/MoeB domain family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.	Identified by match to protein family HMM PF01398.	0.920
SRU_2042	SRU_2041	SRU_2042	SRU_2041	MoeZ/MoeB domain family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.	ThiS family, putative; Identified by match to protein family HMM PF02597.	0.999
SRU_2042	rpsQ	SRU_2042	SRU_1044	MoeZ/MoeB domain family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.704