STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acyPAcylphosphatase; Identified by match to protein family HMM PF00708. (95 aa)    
Predicted Functional Partners:
SRU_0414
Amidase, putative; Identified by match to protein family HMM PF01425.
    
  0.904
SRU_1228
Aldehyde dehydrogenase, mitochondrial precursor; Identified by match to protein family HMM PF00171.
     
 0.904
SRU_1456
Probable aldehyde dehydrogenase aldX; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
     
 0.904
acs
acetyl-CoA synthase; Identified by match to protein family HMM PF00501.
     
  0.900
acs-2
acetyl-CoA synthetase; Identified by match to protein family HMM PF00501.
     
  0.900
hemK
hemK protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.663
PhhA
Tryptophan 5-hydroxylase 1; Identified by match to protein family HMM PF00351.
       0.466
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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