STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2085Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534. (382 aa)    
Predicted Functional Partners:
bshC
Conserved hypothetical protein; Belongs to the BshC family.
  
   
 0.781
SRU_0934
GlcNAc-PI de-N-acetylase family; Identified by match to protein family HMM PF02585.
  
    0.770
SRU_1493
Protein of unknown function (DUF1094) family; Belongs to the UPF0403 family.
  
     0.770
SRU_0242
Conserved hypothetical protein; Belongs to the UPF0403 family.
  
     0.769
SRU_1699
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.697
SRU_1311
General stress protein.
  
     0.693
SRU_0667
Pyridine nucleotide-disulphide oxidoreductase, putative; Identified by match to protein family HMM PF01266; match to protein family HMM PF07992.
  
     0.587
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.520
SRU_2679
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.485
SRU_0361
Putative alpha-amylase; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; Belongs to the glycosyl hydrolase 13 family.
   
  0.473
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.