Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2162Conserved hypothetical protein. (201 aa)    
Predicted Functional Partners:
SRU_1857
Conserved hypothetical protein.
 
     0.782
SRU_0076
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.757
SRU_1499
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.748
SRU_1194
Glycosyl transferase-related protein; Identified by match to protein family HMM PF00535.
 
     0.747
SRU_2767
Conserved hypothetical protein.
  
     0.746
SRU_1901
Protein of unknown function, DUF547 family; Identified by match to protein family HMM PF04784.
 
     0.717
SRU_1923
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.688
SRU_2318
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
     0.688
SRU_0018
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.677
SRU_2161
TonB-dependent receptor domain protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.587
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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