STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2224Photoactive yellow protein. (156 aa)    
Predicted Functional Partners:
cheB
Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229.
 
 
 0.893
cheW
Purine-binding chemotaxis protein CheW; Identified by match to protein family HMM PF01584.
  
 
 0.810
cheA
Chemotaxis histidine kinase; Identified by match to protein family HMM PF01584; match to protein family HMM PF02518; match to protein family HMM PF02895.
  
 
 0.644
crtI
Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
  
     0.553
SRU_2052
Conserved hypothetical protein.
  
     0.498
SRU_0470
Sensory histidine protein kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
 
 0.461
flgC
Flagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF06429; match to protein family HMM TIGR01395.
   
   0.439
SRU_2783
HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase, putative; Identified by match to protein family HMM PF05761; match to protein family HMM TIGR02244.
  
 
   0.423
fliI
Flagellar protein export ATPase FliI; Identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545.
   
   0.411
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.